PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00207g01353.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family MYB_related
Protein Properties Length: 238aa    MW: 26428.1 Da    PI: 7.512
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00207g01353.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding35.81.9e-11555146
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                              + +WT eE+e l+ +v+++G g Wk I +        + R+  ++k++w++
  Peaxi162Scf00207g01353.1  5 KTKWTSEEEEALKAGVTKHGVGKWKNILKDPEfapflTIRSNIDLKDKWRN 55
                              579*********************************999**********99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.981162IPR017930Myb domain
SuperFamilySSF466892.44E-15258IPR009057Homeodomain-like
SMARTSM007175.3E-6459IPR001005SANT/Myb domain
PfamPF002492.5E-6555IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-13556IPR009057Homeodomain-like
CDDcd116601.06E-20756No hitNo description
Gene3DG3DSA:1.10.10.108.5E-11111172IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM005264.0E-12111176IPR005818Linker histone H1/H5, domain H15
PROSITE profilePS5150417.7113200IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF467854.68E-11114172IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF005381.4E-8115172IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MGNQKTKWTS EEEEALKAGV TKHGVGKWKN ILKDPEFAPF LTIRSNIDLK DKWRNMGIST  60
GIAQGSDDKS RFARVRPVTA TAPAIAQSSL AMTSVAEDEV TDYPSKSRKD GKNAPKYSEM  120
IFEALSSMRD SNASDLGAIV GFIETRHEVP QNFRRLLSST LRRLVLQGKL ERSIETIEEA  180
ARTAAYKVVD AENKSFVAAE AVKEAERVSK MAEDAELMLQ LVKDIYEQCL RGETVLLA
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00231DAPTransfer from AT1G72740Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009616026.11e-113PREDICTED: telomere repeat-binding factor 4
RefseqXP_016510058.11e-113PREDICTED: telomere repeat-binding factor 4-like
SwissprotF4IEY43e-67TRB5_ARATH; Telomere repeat-binding factor 5
TrEMBLA0A061GC922e-97A0A061GC92_THECC; Homeodomain-like/winged-helix DNA-binding family protein, putative
STRINGGLYMA07G00930.11e-85(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA25042355
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72740.28e-51MYB_related family protein